demultiplexing.utf8.md

peter
2019-10-21 

     Min.   1st Qu.    Median      Mean   3rd Qu.      Max. 
 0.003947  0.148303  0.553739  1.000000  1.440665 10.700349 

    Min.  1st Qu.   Median     Mean  3rd Qu.     Max. 
 0.01549  0.19212  0.29829  1.00000  0.47974 25.46884

Table 1: Table linking HTO clusters to HTO to samples.
cluster HTO Sample Treatment Replicate
1 human_3 infected_3 Infected 3
2 human_1 infected_1 Infected 1
3 human_2 infected_2 Infected 2
4 human_1_2_3_4_5 uninfected_3 Uninfected 3
5 human_4 uninfected_1 Uninfected 1
6 human_5 uninfected_2 Uninfected 2
7 NA NA NA NA
Table 1: Tabulation of samples by treatment and replicate (mouse). The samples are unpaired. ‘NA’ values are those samples who HTOs could not be demultiplexed.
Treatment/Replicate 1 2 3 NA_
Infected 1659 1416 1515 0
Uninfected 2153 2483 1728 0
NA 0 0 0 3498